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usageStats and Baseurl changed from http to https

November 18, 2020, 4:45 am
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Hello everyone,
I am pretty new and have inherited the maintenance of an OJS Journal ( 3.1.1.4)

My issue is that my stats are at 0 since we moved from http to https. I have read some other topics but can’t figured it out what i have to do exactly.

So here is what i have in my usageStats Folder:

  • archive folder is filled with usage_events_xxxxxxxx.log but stopped at the date we changed from http to https
  • processing folder has only one file : the usage_events log from today
  • there is nothing in reject folder
  • stage folder has a lot of usage_events log from the day i changed the base url to today
  • in folder scheduledTaskLogs i have a lot of ##plugins.generic.usageStats.usageStatsLoaderName## with each time this line : ##plugins.generic.usageStats.processingPathNotEmpty##
  • in config file, my base_url is right
  • in DB, metrics table has entry but stopped the day i switch to https
  • I am using acron

Can someone help me?

Thank you in advance !

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Submissions can't be loaded in OMP 3.2.1 using rewrites

November 12, 2020, 2:07 pm
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Hi,

in OJS 3.1.2 and OMP 1.2 I use rewrites to get rid of “index.php/journal” in the urls. I also use “base_url[journal] = domain.org” in config.inc.php. In OMP 1.2 it works. In OJS 3.1.2 I only get an error for the statistics tool.

    RewriteRule ^/(index.php)?/?$ /index.php/journal/index [L]
    RewriteRule ^/journal/(.*)$ /$1 [R,L]
    RewriteCond %{REQUEST_URI} !/index.php/
    RewriteCond %{DOCUMENT_ROOT}%{REQUEST_URI} !-d
    RewriteCond %{DOCUMENT_ROOT}%{REQUEST_URI} !-f
    RewriteRule ^(.*)$ /index.php/journal/$1 [QSA,L]

But after upgrading to OMP 3.2.1., the submissions in the backend can’t be loaded anymore (“An unexpected error has occurred. Please reload the page and try again.”):

PHP Fatal error: Uncaught Error: Call to undefined function import() in /data/omp/domain.org/api/v1/_submissions/index.php:19\nStack trace:\n#0 {main}\n thrown in /data/omp/domain.org/api/v1/_submissions/index.php on line 19, referer: http://domain.org/submissions

I read a number of posts and issues in the forum and on github, but I couldn’t resolve it. Without rewrites, everything works fine (but DOIs can’t be resolved anymore).

regards,
Carola

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"List of contributors" empty after upgrading to OJS 3.2

November 18, 2020, 8:11 am
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Since upgrading OJS to 3.2.1.2, the contributor list for all articles (published and unpublished) is now blank. While this can be manually corrected for the yet-to-be-published articles, the metadata for the published articles cannot be edited (short of versioning). Any advice as to how this has happened and how I can remedy it would be appreciated.

Screen Shot 2020-11-18 at 10.22.19 AM
Screen Shot 2020-11-18 at 10.22.19 AM2398×1286 159 KB

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Describing your journal issue - editing choices (whether paragraph, title, centered etc.) do not appear on final page

November 18, 2020, 8:53 am
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Hi all, I am currently using the OJS 3.1.2 version and had an problem while working on my journal issue. I was modifying the data of my issue (where you can give your issue a title, describe the volume, add a description and an image), and I was trying to add, in the description box, a title that would be centered on my page. However, when I previewed the final result of my editing choices (centered title), it did not work. The text appears as a paragraph. I tried to publish the issue to see if the problem could go away but it does not work either. Is there a possibility to resolve this problem ? Thank you very much !

Description of my journal issue
Description of my journal issue998×686 33.9 KB
Final result of my title (not centered, not a title but paragraph)
Final result of my title (not centered, not a title but paragraph)1424×398 15.2 KB

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Upgrade OJS 3.1.1.4 -> OJS 3.1.1.4 3.2.1.2 problem

November 18, 2020, 8:05 am
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Hi. I’m new at PKP and need some help.
After update, I have a problem.
In English localization - all ok
But in Ukraine i have some like this:
class=“page_title” and

after class=“label” look like “???”

[image]

eng
eng838×809 172 KB

ua
ua822×705 137 KB

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Change role title in monograph view

November 19, 2020, 2:16 am
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Hi,
I use the version 3.2.1.1, when I publish a monograph, at the top inside the

tag where the list of authors appear, there is the title

Authors

, however the authors that are in the list must appear with the role “Cordinator”, in the control panel it is already configured with that role but in the view it continues to appear with the title of “Authors”, there any way to change the title Authors to Cordinator?

Autores
Autores1673×580 49.4 KB

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Theme installation problem ojs 2.3.4

November 19, 2020, 3:28 am
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I tried to install a new responsive theme and gave the following problem
Fatal error: require_once (): Failed opening required ‘lib / pkp / classes / plugins / ThemePlugin.inc.php’ (include_path = '.; C: \ xampp \ htdocs \ desRevista / classes; C: \ xampp \ htdocs \ desRevista / pages; C: \ xampp \ htdocs \ desRevista / lib / pkp; C: \ xampp \ htdocs \ desRevista / lib / pkp / classes; C: \ xampp \ htdocs \ desRevista / lib / pkp / pages; C: \ xampp \ htdocs \ desRevista / lib / pkp / lib / adodb; C: \ xampp \ htdocs \ desRevista / lib / pkp / lib / phputf8; C: \ xampp \ htdocs \ desRevista / lib / pkp / lib / pqp / classes; C : \ xampp \ htdocs \ desRevista / lib / pkp / lib / smarty; C: \ xampp \ php \ PEAR ') in C: \ xampp \ htdocs \ desRevista \ lib \ pkp \ includes \ functions.inc.php on line 32

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[OJS 3.1] How to get the Usage Statistics plugin to work?

November 19, 2020, 7:22 am
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Hi all,

  • Application Version - OJS 3.1.1.4

I am experiencing issues with getting the usageStats plugin. After spending a few hours checking all the possible details, settings and configuration I decided to write here, my apologies in advance if this has been explained somewhere else.

The journals were running the usageStats plugin fine until Aug 2020, but it stopped working towards the end of Aug I don’t seem able to get it back up.

  • both usageStats and acron plugins are enabled on the journal
  • the OJS instance has 4 journals running at the moment
  • permissions on the plugin code is correct
  • the usageStats-related folders are in place in the files/usageStats folder
  • files/usageStats/archive contains logs until end of Aug
  • files/usageStats/processing is empty
  • files/usageStats/stage is empty
  • files/usageStats/usageEventLogs is empty

This is the most recent entry in the metrics table for one of the affected journals:
usage_events_20200821.log,256,3,,3,20200821,202008,,,,,ojs::counter,3,,,,

Any idea of how to debug what’s going wrong with the metrics being processed?

Thank you very much

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PDF tag with articles in two languages

November 19, 2020, 12:31 pm
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Hello,

Tomorrow we are going online with a Journal in which we have been working for a long time.
The Journal is bilingual (English/Spanish) but every final galley is in both languages, as we have worked with translators.
When uploading the final galleys I had to choose a language (I chose Spanish, although they are all bilingual) so now, when publishing, all the English speakers visitors see in the PDF tags something like “PDF (Español)”. Is there a way to remove the language from the tag? To show only “PDF”?
I already looked in all the other posts from people having similar problems and apparently I just need to modify this:

function getGalleyLabel() {
	$label = $this->getLabel();
	if ($this->getLocale() != AppLocale::getLocale()) {
		$locales = AppLocale::getAllLocales();
		$label .= ' (' . $locales[$this->getLocale()] . ')';
	}
	return $label;
}

As I am not an expert on php I would kindly ask if someone could tell me what shall I change, in order to have in all the PDF tags just “PDF” written, not mattering which language visitors are using.

Thank you very much,
Guillermo

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Upgrade 3.0.2.0 -> 3.2.1-1 keywords being lost in upgrade

November 19, 2020, 6:39 pm
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[This is a continuation of a thread at Upgrade 3.0.2.0 -> 3.2.1-1 / Duplicate entry 'XXXX' for key 'controlled_vocabs.controlled_vocab_symbolic' continued in a new thread as per the request of @asmecher ]

We have applied the patches for issue 6213 appear to have fixed most of the issues. In particular the migration now progresses without complaining and keywords can be assigned and saved.

However, keywords which had been assigned prior to the upgrade appear to have been lost. I’m not sure how much of a priority this is, since the keywords don’t appear to be displayed anywhere obvious. There is a possibly relavent error in the logs (it’s the only error we’re seeing in the logs):

[Mon Sep 14 14:48:01.935066 2020] [php7:warn] [pid 26405] [client 10.30.40.114:53680] PHP Warning: in_array() expects parameter 2 to be array, null given in /var/www/ojs/lib/pkp/pages/workflow/PKPWorkflowHandler.inc.php on line 373, referer: https://{{hostname}}/test/manageIssues

cheers
stuart yeates

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ORCID Fatal Error

November 19, 2020, 10:36 pm
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(topic withdrawn by author, will be automatically deleted in 24 hours unless flagged)

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After upgrade to OJS 3.2.1.2 - ORCID plugin producing fatal error

November 19, 2020, 11:27 pm
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Hi @Dulip_Withanage,
After I upgraded to OJS 3.2.1.2, the ORCID plugin is throwing a fatal error at the time of Registering a user account.

See the screenshot below:

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11139×892 35.2 KB

Following is the php error:

[20-Nov-2020 02:04:32 America/New_York] PHP Fatal error:  Uncaught Error: Call to undefined method Application::getHttpClient() in /home/seisense/journal.seisense.com/plugins/generic/orcidProfile/pages/OrcidHandler.inc.php:59

Stack trace:
#0 /home/seisense/journal.seisense.com/lib/pkp/classes/core/PKPRouter.inc.php(391): OrcidHandler->orcidAuthorize(Array, Object(Request))
#1 /home/seisense/journal.seisense.com/lib/pkp/classes/core/PKPPageRouter.inc.php(231): PKPRouter->_authorizeInitializeAndCallRequest(Array, Object(Request), Array, false)
#2 /home/seisense/journal.seisense.com/lib/pkp/classes/core/Dispatcher.inc.php(143): PKPPageRouter->route(Object(Request))
#3 /home/seisense/journal.seisense.com/lib/pkp/classes/core/PKPApplication.inc.php(281): Dispatcher->dispatch(Object(Request))
#4 /home/seisense/journal.seisense.com/index.php(68): PKPApplication->execute()
#5 {main}
thrown in /home/seisense/journal.seisense.com/plugins/generic/orcidProfile/pages/OrcidHandler.inc.php on line 59

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Release Update: OJS, OMP, and OPS 3.2.1-2

November 20, 2020, 12:01 am
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Downloads are now available for OJS/OMP/OPS 3.2.1-2. This is a bugfix release that corrects a number of issues and adds translation updates and security improvements.

To download, please see our software pages as follows:

A list of bugs corrected in this release are available from the PKP GitHub Repository at https://github.com/pkp/pkp-lib/milestone/45?closed=1.

Coming soon! OJS 3.3 is slated for release in early 2021. Stay tuned for more information.

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Missing metadata at Crossref

November 20, 2020, 1:45 am
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Hi,
We use CrossRef XML Export Plugin in connection with the registration of DOI at Crossref. Therefore, we were convinced that all references entered as metadata would also be registered with CrossRef. Unfortunately, that is not the case. Is it a mistake on our or on your part, or should we contact Crossref?
Our current version is 3.1.1.4

crossref
crossref1502×947 64.6 KB

The informations is taken from Crossref’s Participation Reprots page: https://www.crossref.org/members/prep/4226
Best
Niels Erik

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Estadisticas en la versión de OJS 3.1.1.4

November 20, 2020, 7:12 am
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Hola, les escribo porque necesito poder descargar estadísticas por articulo en el OJS de nuestra revista y no he logrado hacerlo. La versión que tenemos es la 3.1.1.4. y no tenemos oportunidad de actualizar a otra versión ya que depende de la Universidad.
Les agradezco toda la información que me puedan brindar.
Saludos

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References HTML Tag support removed?

November 20, 2020, 7:39 am
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Application Version - OJS 3.2.1-2
Description of issue: I upgraded from OJS 3.1.2 to OJS 3.2.1-2
In metadata text field for ‘References’, earlier version of OJS had html tag support which used to render the references list properly. Now after upgrade, the html tags are shown as it is.
E.g. See this article landing page http://amphysiol.com/index.php/amp/article/view/v4i2.115684
Was it forced in this version not to take html tags or can it be activated by modifying any codes in OJS files.

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Primary locale is changed for some users in User Interface

November 20, 2020, 7:46 am
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In a journal I have selected Spanish as the primary locale, but some users see the interface in Portuguese.
I tried to solve the problem by successively changing the primary locale to English and Portuguese, then back to Spanish. But everything remains the same.
OJS version: 3.2.1.1
Could you help me with this?

Gerardo Tovar

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Import problem: Element '{http://pkp.sfu.ca}issue_covers': This element is not expected

November 20, 2020, 8:03 am
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PLN Plugin doesn`t work - Failed Ajax request or invalid JSON returned

November 20, 2020, 8:17 am
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Hi @asmecher,

For PKP PN Plugin I received in error.log:

[20-Nov-2020 16:50:29 Europe/Belgrade] PHP Fatal error: Uncaught Exception: DB Error: Table ‘ijcadsee_ojs853.pln_deposits’ doesn’t exist Query: SELECT *
FROM pln_deposits
WHERE journal_id = ?
ORDER BY deposit_id in /home/ijcadsee/public_html/lib/pkp/classes/db/DAO.inc.php:703
Stack trace:
#0 /home/ijcadsee/public_html/lib/pkp/classes/db/DAO.inc.php(197): DAO->handleError(Object(ADODB_mysqli), ‘SELECT *\n\t\t\tFRO…’)
#1 /home/ijcadsee/public_html/plugins/generic/pln/classes/DepositDAO.inc.php(182): DAO->retrieveRange(‘SELECT *\n\t\t\tFRO…’, Array, Object(DBResultRange))
#2 /home/ijcadsee/public_html/plugins/generic/pln/classes/form/PLNStatusForm.inc.php(54): DepositDAO->getByJournalId(1, Object(DBResultRange))
#3 /home/ijcadsee/public_html/plugins/generic/pln/PLNPlugin.inc.php(366): PLNStatusForm->fetch(Object(Request))
#4 /home/ijcadsee/public_html/lib/pkp/classes/controllers/grid/plugins/PluginGridHandler.inc.php(234): PLNPlugin->manage(Array, Object(Request))
#5 /home/ijcadsee/public_html/lib/pkp/classes/core/PKPRouter.inc.php(391): PluginGridHandle in /home/ijcadsee/public_html/lib/pkp/classes/db/DAO.inc.php on line 703

Function in config.ini.php
show_stacktrace = Off
display_errors = Off

I use OJS 3.2.1.2. In previous version of OJS is the same. PLN Plugin doesn`t work.

Any idea?

Regards,
Lazar

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Curent status for PDF to PMC XML conversion

November 20, 2020, 10:44 am
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Hello!

At a certain moment in time PKP was involved in the Open Typesetting stack:
"Open Typesetting Stack
PKP has created a standalone service for converting Microsoft Word and PDF documents to
structured National Library of Medicine JATS XML (used by PLoS and PubMed Central), and from
there, creating attractive HTML, PDF, and ePub article views from the XML. This service is
intended to decrease the labour involved in typesetting, and to facilitate the creation of archivefriendly and web-native article formats. It is called Open Typesetting Stack, or OTS for short. The
OTS service is being integrated into OJS 3 as a plugin and is developed alongside Substance
Software’s Texture WYSIWYG XML editor.More details are here. "

I checked now the Substance Softare’s Texture website, and the PKP link, but both are dead.
http://substance.io/texture/
https://pkp.sfu.ca/open-typesetting-stack/
Do you know what happened, or what is the current status for this development?

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